PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00889
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 328aa    MW: 37185.6 Da    PI: 4.8581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00889genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.8e-2198199199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                 f+k+l++sdv++++r++lpkk ae+h   ++++e++ +t+ d++g   W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +   + ++ ++v
  AA53G00889  98 FQKELKNSDVSSLRRMILPKKAAEAHlpALESKEGIPITMADLDGlHIWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVYQ--DnQSHNYV 193
                 99**************************666668889********99********89999999***9.*******************93..33788788 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++++
  AA53G00889 194 IQARKA 199
                 888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2991206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2396198IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-2796198No hitNo description
SMARTSM010194.2E-2298200IPR003340B3 DNA binding domain
PROSITE profilePS5086310.17998200IPR003340B3 DNA binding domain
PfamPF023626.9E-1898199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMDLDMVAEP QIKTSALMAG VLDSTEFGFG SSGSSDLFNL NRDGWKKKRR LPRLRRSSSS  60
FTLFSFPPLT SHVPTPPPPP LPPRGIQKIE MKRLRFLFQK ELKNSDVSSL RRMILPKKAA  120
EAHLPALESK EGIPITMADL DGLHIWTFKY RYWPNNNSRM YVLENTGDFV NAHGLQLGDF  180
IMVYQDNQSH NYVIQARKAS ESDQEEEEQE QEIVNNEDDD VYTNLTKIEN TVVNDLLLQD  240
HHNNNFNNNN NIIAGKCSYY YPIIDSVATT TATTAGMSFV YDTTALTSND TPLDFLGGLT  300
NNNNNYYSKF GSFEAFGSVE NISLDDFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KKKRR
24550KKKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613409.11e-136PREDICTED: B3 domain-containing transcription factor FUS3
SwissprotQ9LW311e-136FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A0D2ZPG51e-136A0A0D2ZPG5_BRAOL; Uncharacterized protein
STRINGBra032953.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-113B3 family protein